$NetBSD: patch-ae,v 1.2 2011/10/26 13:47:14 noud4 Exp $

--- jemboss/Makefile.in.orig	Thu Jul 15 07:52:05 2004
+++ jemboss/Makefile.in	Thu Jul 22 12:46:20 2004
@@ -141,7 +141,7 @@
 SHELL = @SHELL@
 STRIP = @STRIP@
 VERSION = @VERSION@
-XLIB = @XLIB@
+XLIB = @X116@ @XLIB@
 X_CFLAGS = @X_CFLAGS@
 X_EXTRA_LIBS = @X_EXTRA_LIBS@
 X_LIBS = @X_LIBS@
@@ -524,8 +524,8 @@
 @ISCYGWIN_TRUE@	  export CLASSPATH; \
 @ISCYGWIN_TRUE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o; \
 @ISCYGWIN_TRUE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java org/emboss/jemboss/draw/PrintDNAImage.java_o; \
-@ISCYGWIN_TRUE@          javac -d . org/emboss/jemboss/draw/DNADraw.java; \
-@ISCYGWIN_TRUE@	  javac -d . org/emboss/jemboss/Jemboss.java; \
+@ISCYGWIN_TRUE@          @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/draw/DNADraw.java; \
+@ISCYGWIN_TRUE@	  @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/Jemboss.java; \
 @ISCYGWIN_TRUE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o ./org/emboss/jemboss/editor/PrintAlignmentImage.java; \
 @ISCYGWIN_TRUE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java_o org/emboss/jemboss/draw/PrintDNAImage.java; \
 @ISCYGWIN_TRUE@	  else \
@@ -533,8 +533,8 @@
 @ISCYGWIN_TRUE@	  export CLASSPATH; \
 @ISCYGWIN_TRUE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o; \
 @ISCYGWIN_TRUE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java org/emboss/jemboss/draw/PrintDNAImage.java_o; \
-@ISCYGWIN_TRUE@          javac -d . org/emboss/jemboss/draw/DNADraw.java; \
-@ISCYGWIN_TRUE@	  javac -d . org/emboss/jemboss/Jemboss.java; \
+@ISCYGWIN_TRUE@          @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/draw/DNADraw.java; \
+@ISCYGWIN_TRUE@	  @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/Jemboss.java; \
 @ISCYGWIN_TRUE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o ./org/emboss/jemboss/editor/PrintAlignmentImage.java; \
 @ISCYGWIN_TRUE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java_o org/emboss/jemboss/draw/PrintDNAImage.java; \
 @ISCYGWIN_TRUE@	  fi); \
@@ -547,8 +547,8 @@
 @ISCYGWIN_FALSE@	  export CLASSPATH; \
 @ISCYGWIN_FALSE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o; \
 @ISCYGWIN_FALSE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java org/emboss/jemboss/draw/PrintDNAImage.java_o; \
-@ISCYGWIN_FALSE@          javac -d . org/emboss/jemboss/draw/DNADraw.java; \
-@ISCYGWIN_FALSE@	  javac -d . org/emboss/jemboss/Jemboss.java; \
+@ISCYGWIN_FALSE@          @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/draw/DNADraw.java; \
+@ISCYGWIN_FALSE@	  @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/Jemboss.java; \
 @ISCYGWIN_FALSE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o ./org/emboss/jemboss/editor/PrintAlignmentImage.java; \
 @ISCYGWIN_FALSE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java_o org/emboss/jemboss/draw/PrintDNAImage.java; \
 @ISCYGWIN_FALSE@	  else \
@@ -556,20 +556,20 @@
 @ISCYGWIN_FALSE@	  export CLASSPATH; \
 @ISCYGWIN_FALSE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o; \
 @ISCYGWIN_FALSE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java org/emboss/jemboss/draw/PrintDNAImage.java_o; \
-@ISCYGWIN_FALSE@          javac -d . org/emboss/jemboss/draw/DNADraw.java; \
-@ISCYGWIN_FALSE@	  javac -d . org/emboss/jemboss/Jemboss.java; \
+@ISCYGWIN_FALSE@          @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/draw/DNADraw.java; \
+@ISCYGWIN_FALSE@	  @JAVAC@ -target 1.3 -source 1.3 -d . org/emboss/jemboss/Jemboss.java; \
 @ISCYGWIN_FALSE@          mv -f ./org/emboss/jemboss/editor/PrintAlignmentImage.java_o ./org/emboss/jemboss/editor/PrintAlignmentImage.java; \
 @ISCYGWIN_FALSE@          mv -f org/emboss/jemboss/draw/PrintDNAImage.java_o org/emboss/jemboss/draw/PrintDNAImage.java; \
 @ISCYGWIN_FALSE@	  fi); \
 @ISCYGWIN_FALSE@	fi
 
 install-exec-hook:
-	rm -f $(DESTDIR)$(bindir)/runJemboss.csh; \
-	echo "#!/bin/csh" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
-	echo "setenv LD_LIBRARY_PATH $(libdir)" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
-	echo "setenv CLASSPATH $(prefix)/share/$(PACKAGE)/jemboss/lib/JembossPrintAlignment.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/xerces.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/mail.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/activation.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jakarta-regexp-1.2.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jalview.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jcert.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jnet.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jsse.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/axis-ant.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/axis.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/commons-discovery.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/commons-logging.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/jaxrpc.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/log4j-1.2.4.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/saaj.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/wsdl4j.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/grout.jar:$(prefix)/share/$(PACKAGE)/jemboss" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
-	echo "(cd $(prefix)/share/$(PACKAGE)/jemboss; java org/emboss/jemboss/Jemboss &)" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
-	chmod 755 $(DESTDIR)$(bindir)/runJemboss.csh;
+#	rm -f $(DESTDIR)$(bindir)/runJemboss.csh; \
+#	echo "#!/bin/csh" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
+#	echo "setenv LD_LIBRARY_PATH $(libdir)" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
+#	echo "setenv CLASSPATH $(prefix)/share/$(PACKAGE)/jemboss/lib/JembossPrintAlignment.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/xerces.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/mail.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/activation.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jakarta-regexp-1.2.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jalview.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jcert.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jnet.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/jsse.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/axis-ant.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/axis.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/commons-discovery.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/commons-logging.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/jaxrpc.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/log4j-1.2.4.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/saaj.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/axis/wsdl4j.jar:$(prefix)/share/$(PACKAGE)/jemboss/lib/grout.jar:$(prefix)/share/$(PACKAGE)/jemboss" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
+#	echo "(cd $(prefix)/share/$(PACKAGE)/jemboss; java org/emboss/jemboss/Jemboss &)" >> $(DESTDIR)$(bindir)/runJemboss.csh; \
+#	chmod 755 $(DESTDIR)$(bindir)/runJemboss.csh;
 
 # tar to pick up the other directories
 # then remove any CVS subdirectories