$NetBSD$

--- Makefile.orig	2018-06-19 14:16:02 UTC
+++ Makefile
@@ -15,7 +15,11 @@
 # BOOST_INCLUDE_DIR - location of boost include files
 # MOTHUR_FILES - default location for mothur to look for input files at runtime. Most often used for reference files.
 
-PREFIX := ${CURDIR} 
+#PREFIX := ${CURDIR} 
+DESTDIR ?= .
+PREFIX ?= /usr/local
+INSTALL ?= install
+ 
 
 64BIT_VERSION ?= yes
 OPTIMIZE ?= yes
@@ -89,13 +93,15 @@ endif
     OBJECTS+=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
     OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
 
-mothur : $(OBJECTS) uchime
+mothur : $(OBJECTS)
 	$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS) $(LIBS)
+	strip mothur
 
-uchime:
-	cd source/uchime_src && ./mk && mv uchime ../../ && cd ..
+#uchime:
+#	cd source/uchime_src && ./mk && mv uchime ../../ && cd ..
 
-install : mothur uchime
+install : mothur 
+	${INSTALL} -c mothur ${DESTDIR}${PREFIX}/bin
 #if [ "${CURDIR}" = "$(PREFIX)" ]; then \
 #		echo 'done'; \
 #	else \