$NetBSD: patch-aa,v 1.1.1.1 2005/03/17 21:16:12 daprice Exp $

--- configure.orig	2004-10-22 12:59:06.000000000 -0600
+++ configure
@@ -15848,13 +15848,13 @@ _ACEOF
 
 fi
 
-
+NCBI_C_PATH=$prefix
 ## NCBI C Toolkit
 if test "$with_ncbi_c" != "no" ; then
    NCBI_C_PATH=${NCBI_C_PATH:="$NCBI"}
-   NCBI_C_INCLUDE="-I$NCBI_C_PATH/include${bit64_sfx}"
+   NCBI_C_INCLUDE="-I$NCBI_C_PATH/include${bit64_sfx}/ncbi"
    if test "$with_debug" = "no" ; then
-     NCBI_C_LIBPATH="$NCBI_C_PATH/lib${bit64_sfx}"
+     NCBI_C_LIBPATH="$NCBI_C_PATH/lib${bit64_sfx}/ncbi"
    else
      NCBI_C_LIBPATH="$NCBI_C_PATH/altlib${bit64_sfx}"
    fi
@@ -15874,6 +15874,7 @@ echo $ECHO_N "checking for the NCBI C to
 if test "${ncbi_cv_lib_ctools+set}" = set; then
   echo $ECHO_N "(cached) $ECHO_C" >&6
 else
+  NCBI_C_INCLUDE=-I$NCBI_C_PATH/include/ncbi
   CPPFLAGS="$NCBI_C_INCLUDE $orig_CPPFLAGS"
        LIBS="$NCBI_C_LIBPATH $NCBI_C_ncbi $NETWORK_LIBS $orig_LIBS"
        cat >conftest.$ac_ext <<_ACEOF