$NetBSD$

--- src/Makefile.in.orig	Tue Jul 27 14:54:57 2004
+++ src/Makefile.in	Tue Jul 27 15:03:11 2004
@@ -48,7 +48,7 @@
 	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
-mkinstalldirs = $(mkdir_p)
+mkinstalldirs = $(SHELL) ../mkinstalldirs
 CONFIG_CLEAN_FILES =
 am__installdirs = "$(DESTDIR)$(libdir)" "$(DESTDIR)$(bindir)"
 libLTLIBRARIES_INSTALL = $(INSTALL)
@@ -70,12 +70,12 @@
 am__DEPENDENCIES_1 =
 @LOCALLINK_FALSE@meme_DEPENDENCIES = libmeme.la $(am__DEPENDENCIES_1)
 @LOCALLINK_TRUE@meme_DEPENDENCIES = libmeme.la \
-@LOCALLINK_TRUE@	../../../nucleus/libnucleus.la \
-@LOCALLINK_TRUE@	../../../ajax/libajax.la \
-@LOCALLINK_TRUE@	../../../plplot/libplplot.la \
+@LOCALLINK_TRUE@	@EMBOSSLIB@/libnucleus.la \
+@LOCALLINK_TRUE@	@EMBOSSLIB@/libajax.la \
+@LOCALLINK_TRUE@	@EMBOSSLIB@/libplplot.la \
 @LOCALLINK_TRUE@	$(am__DEPENDENCIES_1)
 DEFAULT_INCLUDES = -I. -I$(srcdir)
-depcomp = $(SHELL) $(top_srcdir)/depcomp
+depcomp = $(SHELL) ../depcomp
 am__depfiles_maybe = depfiles
 @AMDEP_TRUE@DEP_FILES = ./$(DEPDIR)/align.Plo ./$(DEPDIR)/banner.Plo \
 @AMDEP_TRUE@	./$(DEPDIR)/chi.Plo ./$(DEPDIR)/clock.Plo \
@@ -246,11 +246,11 @@
 target_alias = @target_alias@
 SUBDIRS = INCLUDE
 lib_LTLIBRARIES = libmeme.la
-@LOCALLINK_FALSE@INCLUDES = -IINCLUDE -I${embprefix}/include
-@LOCALLINK_TRUE@INCLUDES = -IINCLUDE -I../../../ajax
+@LOCALLINK_FALSE@INCLUDES = -IINCLUDE -I@INCLUDE@
+@LOCALLINK_TRUE@INCLUDES = -IINCLUDE -I@INCLUDE@
 @ISAIXIA64_FALSE@@ISSHARED_TRUE@AM_CFLAGS = 
-@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_FALSE@AM_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L../../../ajax/.libs -lajax
-@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@AM_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L../../../ajax/.libs -lajax
+@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_FALSE@AM_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L@EMBOSSLIB@ -lajax
+@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@AM_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L@EMBOSSLIB@ -lajax
 MEMESRC = clock.c display.c em.c init.c meme_util.c seq2theta.c \
 	shorten.c starts.c prior.c split.c align.c justlike.c \
 	oops.c tcm.c zoops.c banner.c logs.c palindrome.c gamma.c \
@@ -262,7 +262,7 @@
 libmeme_la_LDFLAGS = -version-info 2:3:1
 meme_SOURCES = meme.c
 @LOCALLINK_FALSE@LDADD = libmeme.la -L${embprefix}/lib -lnucleus -lajax -lplplot $(XLIB)
-@LOCALLINK_TRUE@LDADD = libmeme.la ../../../nucleus/libnucleus.la ../../../ajax/libajax.la ../../../plplot/libplplot.la $(XLIB)
+@LOCALLINK_TRUE@LDADD = libmeme.la @EMBOSSLIB@/libnucleus.la @EMBOSSLIB@/libajax.la @EMBOSSLIB@/libplplot.la $(XLIB)
 all: all-recursive
 
 .SUFFIXES:
