# $NetBSD$
#
###########################################################
#                  Generated by fbsd2pkg                  #
#              Wed May 11 09:22:40 CDT 2016               #
###########################################################

DISTNAME=	samtools-${PORTVERSION}
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
GITHUB_PROJECT=	samtools
GITHUB_TAG=	${PORTVERSION}

MAINTAINER=	bacon4000@gmail.com
HOMEPAGE=	http://www.htslib.org/
COMMENT=	Tools for manipulating next-generation sequencing data

LICENSE=	mit

USE_TOOLS+=	autoconf automake autoreconf gmake perl:run
GNU_CONFIGURE=	yes
REPLACE_PERL=	misc/*.pl misc/plot-bamstats test/test.pl
REPLACE_PYTHON=	misc/*.py

PORTVERSION=	1.3.1

post-patch:
	${CP} ${FILESDIR}/ax_with_htslib.m4 ${WRKSRC}/
	${CP} ${FILESDIR}/ax_with_curses.m4 ${WRKSRC}/

pre-configure:
	cd ${WRKSRC} && autoreconf -if

.include "../../devel/ncurses/buildlink3.mk"
.include "../../lang/python/application.mk"
.include "../../wip/htslib/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
