@comment $NetBSD$
RepeatMasker/ArrayList.pm
RepeatMasker/ArrayListIterator.pm
RepeatMasker/CrossmatchSearchEngine.pm
RepeatMasker/DFAM.pm
RepeatMasker/DFAMRecord.pm
RepeatMasker/DateRepeats
RepeatMasker/DupMasker
RepeatMasker/EMBL.pm
RepeatMasker/FastaDB.pm
RepeatMasker/HMMERSearchEngine.pm
RepeatMasker/HTMLAnnotHeader.html
RepeatMasker/Libraries/Artefacts.embl
RepeatMasker/Libraries/Dfam.h5
RepeatMasker/Libraries/README.meta
RepeatMasker/Libraries/RMRBMeta.embl
RepeatMasker/Libraries/RepeatAnnotationData.pm
RepeatMasker/Libraries/RepeatMasker.lib
RepeatMasker/Libraries/RepeatMaskerLib.h5
RepeatMasker/Libraries/RepeatPeps.lib
RepeatMasker/Libraries/RepeatPeps.readme
RepeatMasker/Libraries/taxonomy.dat
RepeatMasker/LibraryUtils.pm
RepeatMasker/Matrices/crossmatch/14p35g.matrix
RepeatMasker/Matrices/crossmatch/14p37g.matrix
RepeatMasker/Matrices/crossmatch/14p39g.matrix
RepeatMasker/Matrices/crossmatch/14p41g.matrix
RepeatMasker/Matrices/crossmatch/14p43g.matrix
RepeatMasker/Matrices/crossmatch/14p45g.matrix
RepeatMasker/Matrices/crossmatch/14p47g.matrix
RepeatMasker/Matrices/crossmatch/14p49g.matrix
RepeatMasker/Matrices/crossmatch/14p51g.matrix
RepeatMasker/Matrices/crossmatch/14p53g.matrix
RepeatMasker/Matrices/crossmatch/18p35g.matrix
RepeatMasker/Matrices/crossmatch/18p37g.matrix
RepeatMasker/Matrices/crossmatch/18p39g.matrix
RepeatMasker/Matrices/crossmatch/18p41g.matrix
RepeatMasker/Matrices/crossmatch/18p43g.matrix
RepeatMasker/Matrices/crossmatch/18p45g.matrix
RepeatMasker/Matrices/crossmatch/18p47g.matrix
RepeatMasker/Matrices/crossmatch/18p49g.matrix
RepeatMasker/Matrices/crossmatch/18p51g.matrix
RepeatMasker/Matrices/crossmatch/18p53g.matrix
RepeatMasker/Matrices/crossmatch/20p35g.matrix
RepeatMasker/Matrices/crossmatch/20p37g.matrix
RepeatMasker/Matrices/crossmatch/20p39g.matrix
RepeatMasker/Matrices/crossmatch/20p41g.matrix
RepeatMasker/Matrices/crossmatch/20p43g.matrix
RepeatMasker/Matrices/crossmatch/20p45g.matrix
RepeatMasker/Matrices/crossmatch/20p47g.matrix
RepeatMasker/Matrices/crossmatch/20p49g.matrix
RepeatMasker/Matrices/crossmatch/20p51g.matrix
RepeatMasker/Matrices/crossmatch/20p53g.matrix
RepeatMasker/Matrices/crossmatch/25p35g.matrix
RepeatMasker/Matrices/crossmatch/25p37g.matrix
RepeatMasker/Matrices/crossmatch/25p39g.matrix
RepeatMasker/Matrices/crossmatch/25p41g.matrix
RepeatMasker/Matrices/crossmatch/25p43g.matrix
RepeatMasker/Matrices/crossmatch/25p45g.matrix
RepeatMasker/Matrices/crossmatch/25p47g.matrix
RepeatMasker/Matrices/crossmatch/25p49g.matrix
RepeatMasker/Matrices/crossmatch/25p51g.matrix
RepeatMasker/Matrices/crossmatch/25p53g.matrix
RepeatMasker/Matrices/crossmatch/30p53g.matrix
RepeatMasker/Matrices/crossmatch/at.matrix
RepeatMasker/Matrices/crossmatch/identity.matrix
RepeatMasker/Matrices/crossmatch/simple.matrix
RepeatMasker/Matrices/crossmatch/simple1.matrix
RepeatMasker/Matrices/crossmatch/transp.matrix
RepeatMasker/Matrices/ncbi/nt/14p35g.matrix
RepeatMasker/Matrices/ncbi/nt/14p37g.matrix
RepeatMasker/Matrices/ncbi/nt/14p39g.matrix
RepeatMasker/Matrices/ncbi/nt/14p41g.matrix
RepeatMasker/Matrices/ncbi/nt/14p43g.matrix
RepeatMasker/Matrices/ncbi/nt/14p45g.matrix
RepeatMasker/Matrices/ncbi/nt/14p47g.matrix
RepeatMasker/Matrices/ncbi/nt/14p49g.matrix
RepeatMasker/Matrices/ncbi/nt/14p51g.matrix
RepeatMasker/Matrices/ncbi/nt/14p53g.matrix
RepeatMasker/Matrices/ncbi/nt/18p35g.matrix
RepeatMasker/Matrices/ncbi/nt/18p37g.matrix
RepeatMasker/Matrices/ncbi/nt/18p39g.matrix
RepeatMasker/Matrices/ncbi/nt/18p41g.matrix
RepeatMasker/Matrices/ncbi/nt/18p43g.matrix
RepeatMasker/Matrices/ncbi/nt/18p45g.matrix
RepeatMasker/Matrices/ncbi/nt/18p47g.matrix
RepeatMasker/Matrices/ncbi/nt/18p49g.matrix
RepeatMasker/Matrices/ncbi/nt/18p51g.matrix
RepeatMasker/Matrices/ncbi/nt/18p53g.matrix
RepeatMasker/Matrices/ncbi/nt/20p35g.matrix
RepeatMasker/Matrices/ncbi/nt/20p37g.matrix
RepeatMasker/Matrices/ncbi/nt/20p39g.matrix
RepeatMasker/Matrices/ncbi/nt/20p41g.matrix
RepeatMasker/Matrices/ncbi/nt/20p43g.matrix
RepeatMasker/Matrices/ncbi/nt/20p45g.matrix
RepeatMasker/Matrices/ncbi/nt/20p47g.matrix
RepeatMasker/Matrices/ncbi/nt/20p49g.matrix
RepeatMasker/Matrices/ncbi/nt/20p51g.matrix
RepeatMasker/Matrices/ncbi/nt/20p53g.matrix
RepeatMasker/Matrices/ncbi/nt/25p35g.matrix
RepeatMasker/Matrices/ncbi/nt/25p37g.matrix
RepeatMasker/Matrices/ncbi/nt/25p39g.matrix
RepeatMasker/Matrices/ncbi/nt/25p41g.matrix
RepeatMasker/Matrices/ncbi/nt/25p43g.matrix
RepeatMasker/Matrices/ncbi/nt/25p45g.matrix
RepeatMasker/Matrices/ncbi/nt/25p47g.matrix
RepeatMasker/Matrices/ncbi/nt/25p49g.matrix
RepeatMasker/Matrices/ncbi/nt/25p51g.matrix
RepeatMasker/Matrices/ncbi/nt/25p53g.matrix
RepeatMasker/Matrices/ncbi/nt/30p53g.matrix
RepeatMasker/Matrices/ncbi/nt/at.matrix
RepeatMasker/Matrices/ncbi/nt/atx.matrix
RepeatMasker/Matrices/ncbi/nt/identity.matrix
RepeatMasker/Matrices/ncbi/nt/ncbiblastdefault.matrix
RepeatMasker/Matrices/ncbi/nt/simple.matrix
RepeatMasker/Matrices/ncbi/nt/simple1.matrix
RepeatMasker/Matrices/ncbi/nt/simplex.matrix
RepeatMasker/Matrices/ncbi/nt/wublastdefault.matrix
RepeatMasker/Matrices/wublast/aa/14p35g.matrix
RepeatMasker/Matrices/wublast/aa/14p37g.matrix
RepeatMasker/Matrices/wublast/aa/14p39g.matrix
RepeatMasker/Matrices/wublast/aa/14p41g.matrix
RepeatMasker/Matrices/wublast/aa/14p43g.matrix
RepeatMasker/Matrices/wublast/aa/14p45g.matrix
RepeatMasker/Matrices/wublast/aa/14p47g.matrix
RepeatMasker/Matrices/wublast/aa/14p49g.matrix
RepeatMasker/Matrices/wublast/aa/14p51g.matrix
RepeatMasker/Matrices/wublast/aa/14p53g.matrix
RepeatMasker/Matrices/wublast/aa/18p35g.matrix
RepeatMasker/Matrices/wublast/aa/18p37g.matrix
RepeatMasker/Matrices/wublast/aa/18p39g.matrix
RepeatMasker/Matrices/wublast/aa/18p41g.matrix
RepeatMasker/Matrices/wublast/aa/18p43g.matrix
RepeatMasker/Matrices/wublast/aa/18p45g.matrix
RepeatMasker/Matrices/wublast/aa/18p47g.matrix
RepeatMasker/Matrices/wublast/aa/18p49g.matrix
RepeatMasker/Matrices/wublast/aa/18p51g.matrix
RepeatMasker/Matrices/wublast/aa/18p53g.matrix
RepeatMasker/Matrices/wublast/aa/20p35g.matrix
RepeatMasker/Matrices/wublast/aa/20p37g.matrix
RepeatMasker/Matrices/wublast/aa/20p39g.matrix
RepeatMasker/Matrices/wublast/aa/20p41g.matrix
RepeatMasker/Matrices/wublast/aa/20p43g.matrix
RepeatMasker/Matrices/wublast/aa/20p45g.matrix
RepeatMasker/Matrices/wublast/aa/20p47g.matrix
RepeatMasker/Matrices/wublast/aa/20p49g.matrix
RepeatMasker/Matrices/wublast/aa/20p51g.matrix
RepeatMasker/Matrices/wublast/aa/20p53g.matrix
RepeatMasker/Matrices/wublast/aa/25p35g.matrix
RepeatMasker/Matrices/wublast/aa/25p37g.matrix
RepeatMasker/Matrices/wublast/aa/25p39g.matrix
RepeatMasker/Matrices/wublast/aa/25p41g.matrix
RepeatMasker/Matrices/wublast/aa/25p43g.matrix
RepeatMasker/Matrices/wublast/aa/25p45g.matrix
RepeatMasker/Matrices/wublast/aa/25p47g.matrix
RepeatMasker/Matrices/wublast/aa/25p49g.matrix
RepeatMasker/Matrices/wublast/aa/25p51g.matrix
RepeatMasker/Matrices/wublast/aa/25p53g.matrix
RepeatMasker/Matrices/wublast/aa/30p53g.matrix
RepeatMasker/Matrices/wublast/aa/at.matrix
RepeatMasker/Matrices/wublast/aa/identity.matrix
RepeatMasker/Matrices/wublast/aa/simple.matrix
RepeatMasker/Matrices/wublast/aa/simple1.matrix
RepeatMasker/Matrices/wublast/nt/14p35g.matrix
RepeatMasker/Matrices/wublast/nt/14p35g.matrix.4.2
RepeatMasker/Matrices/wublast/nt/14p35g.matrix.4.4
RepeatMasker/Matrices/wublast/nt/20p41g.matrix
RepeatMasker/Matrices/wublast/nt/20p41g.matrix.4.2
RepeatMasker/Matrices/wublast/nt/20p41g.matrix.4.4
RepeatMasker/Matrix.pm
RepeatMasker/NCBIBlastSearchEngine.pm
RepeatMasker/NCBIBlastXSearchEngine.pm
RepeatMasker/PRSearchResult.pm
RepeatMasker/ProcessRepeats
RepeatMasker/PubRef.pm
RepeatMasker/RepbaseEMBL.pm
RepeatMasker/RepbaseRecord.pm
RepeatMasker/RepeatMasker
RepeatMasker/RepeatMaskerConfig.pm
RepeatMasker/RepeatMaskerConfig.pm.bak
RepeatMasker/RepeatProteinMask
RepeatMasker/RepeatRecord.pm
RepeatMasker/SearchEngineI.pm
RepeatMasker/SearchResult.pm
RepeatMasker/SearchResultCollection.pm
RepeatMasker/SeqDBI.pm
RepeatMasker/SimpleBatcher.pm
RepeatMasker/TRF.pm
RepeatMasker/TRFResult.pm
RepeatMasker/TRFSearchResult.pm
RepeatMasker/Taxonomy.pm
RepeatMasker/WUBlastSearchEngine.pm
RepeatMasker/WUBlastXSearchEngine.pm
RepeatMasker/addRepBase.pl
RepeatMasker/bluegrad.jpg
RepeatMasker/configure
RepeatMasker/famdb.py
RepeatMasker/util/RM2Bed.py
RepeatMasker/util/buildRMLibFromEMBL.pl
RepeatMasker/util/buildSummary.pl
RepeatMasker/util/calcDivergenceFromAlign.pl
RepeatMasker/util/createRepeatLandscape.pl
RepeatMasker/util/dupliconToSVG.pl
RepeatMasker/util/getRepeatMaskerBatch.pl
RepeatMasker/util/maskFile.pl
RepeatMasker/util/rmOut2Fasta.pl
RepeatMasker/util/rmOutToGFF3.pl
RepeatMasker/util/rmToUCSCTables.pl
RepeatMasker/util/trfMask
RepeatMasker/util/wublastToCrossmatch.pl
share/doc/RepeatMasker/README.md
share/doc/RepeatMasker/daterepeats.help
share/doc/RepeatMasker/repeatmasker.help
