# $NetBSD$
#
###########################################################
#                  Generated by fbsd2pkg                  #
#              Wed Mar  2 08:06:07 CST 2016               #
###########################################################

DISTNAME=	bowtie2-${PORTVERSION}
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=BenLangmead/}
GITHUB_PROJECT=	bowtie2
GITHUB_TAG=	v${PORTVERSION}

MAINTAINER=	bacon4000@gmail.com
HOMEPAGE=	http://bowtie-bio.sourceforge.net/index.shtml
COMMENT=	Ultrafast, memory-efficient short read aligner
LICENSE=	artistic

USE_LANGUAGES=	c c++
USE_TOOLS+=	gmake perl:run pax
REPLACE_PERL=	scripts/*.pl bowtie2
REPLACE_PYTHON=	bowtie2-build bowtie2-inspect

PORTVERSION=	2.2.7
DATADIR=	${PREFIX}/share/bowtie2
DOCSDIR=	${PREFIX}/share/doc/bowtie2
EXAMPLESDIR=	${PREFIX}/share/examples/bowtie2

INSTALLATION_DIRS=	share/bowtie2/doc share/bowtie2/examples share/bowtie2/scripts

post-install:
	${INSTALL_PROGRAM} \
		${WRKSRC}/bowtie2*-s \
		${WRKSRC}/bowtie2*-l \
		${DESTDIR}${PREFIX}/bin
	${INSTALL_SCRIPT} \
		${WRKSRC}/scripts/*.sh \
		${WRKSRC}/scripts/*.pl \
		${DESTDIR}${DATADIR}/scripts
	${INSTALL_SCRIPT} \
		${FILESDIR}/bowtie2-manual \
		${DESTDIR}${PREFIX}/bin
	cd ${WRKSRC}/example && pax -rw index reads reference \
		${DESTDIR}${EXAMPLESDIR}
	cd ${WRKSRC}/doc && pax -rw * ${DESTDIR}${DOCSDIR}

.include "../../lang/python/application.mk"
.include "../../mk/bsd.pkg.mk"
