@comment $NetBSD$
bin/TransDecoder.LongOrfs
bin/TransDecoder.Predict
libexec/TransDecoder/util/cdna_alignment_orf_to_genome_orf.pl
libexec/TransDecoder/util/compute_base_probs.pl
libexec/TransDecoder/util/cufflinks_gtf_genome_to_cdna_fasta.pl
libexec/TransDecoder/util/cufflinks_gtf_to_alignment_gff3.pl
libexec/TransDecoder/util/cufflinks_gtf_to_bed.pl
libexec/TransDecoder/util/ffindex_resume.pl
libexec/TransDecoder/util/gene_list_to_gff.pl
libexec/TransDecoder/util/get_top_longest_fasta_entries.pl
libexec/TransDecoder/util/gff3_file_to_bed.pl
libexec/TransDecoder/util/gff3_file_to_proteins.pl
libexec/TransDecoder/util/index_gff3_files_by_isoform.pl
libexec/TransDecoder/util/nr_ORFs_gff3.pl
libexec/TransDecoder/util/pfam_runner.pl
libexec/TransDecoder/util/remove_eclipsed_ORFs.pl
libexec/TransDecoder/util/score_CDS_liklihood_all_6_frames.pl
libexec/TransDecoder/util/seq_n_baseprobs_to_logliklihood_vals.pl
lib/TransDecoder/PerlLib/Fasta_reader.pm
lib/TransDecoder/PerlLib/Gene_obj_indexer.pm
lib/TransDecoder/PerlLib/Gene_obj.pm
lib/TransDecoder/PerlLib/GFF3_utils.pm
lib/TransDecoder/PerlLib/Longest_orf.pm
lib/TransDecoder/PerlLib/Nuc_translator.pm
lib/TransDecoder/PerlLib/TiedHash.pm
