# $NetBSD$
#
###########################################################
#                  Generated by fbsd2pkg                  #
#              Wed May 11 09:22:40 CDT 2016               #
###########################################################

DISTNAME=	samtools-${PORTVERSION}
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=samtools/}
GITHUB_PROJECT=	samtools
GITHUB_TAG=	${PORTVERSION}

MAINTAINER=	bacon4000@gmail.com
HOMEPAGE=	http://www.htslib.org/
COMMENT=	Tools for manipulating next-generation sequencing data

LICENSE=	mit

#USE_LANGUAGES=	c c++
USE_TOOLS+=	autoconf automake autoreconf gmake perl
GNU_CONFIGURE=	yes
REPLACE_PERL=	misc/*.pl misc/plot-bamstats test/test.pl
REPLACE_PYTHON=	misc/*.py

SUBST_CLASSES+=		version
SUBST_STAGE.version=	post-patch
SUBST_SED.version+=	-e 's|@PORTVERSION@|${PORTVERSION}|g'
SUBST_FILES.version+=	${WRKSRC}/configure.ac

CPPFLAGS+=	-I${PREFIX}/include
MAKE_ENV=	INSTALL_LIB="${INSTALL_LIB}" \
		INSTALL_DATA="${INSTALL_DATA}" \
		INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
		INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
		INSTALL_DIR="${MKDIR}"

PORTVERSION=	1.3.1

post-patch:
	${CP} ${FILESDIR}/ax_with_htslib.m4 ${WRKSRC}/
	${CP} ${FILESDIR}/ax_with_curses.m4 ${WRKSRC}/

pre-configure:
	cd ${WRKSRC} && autoreconf -if

.include "../../devel/ncurses/buildlink3.mk"
.include "../../lang/python/application.mk"
.include "../../wip/htslib/buildlink3.mk"
.include "../../devel/zlib/buildlink3.mk"
.include "../../mk/bsd.pkg.mk"
